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Found 2867 results for path Down-Up-Up. Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM logFC M26/M2 FDR M26/M2 Classification Human genes C.elegans genes Annotation
1. MligTC454_45835 Mlig024551.g3 11.85 0.226 0.038

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TUBA1A mec-12 Mlig024551.g3 {REF} {Length: 3729} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.25, score=230.7]; Tubulin C-terminal domain [PF03953.17, score=171.4]; Tubulin domain [PF14881.6, score=18.9]} {Human: ENSG00000167552, TUBA1A, tubulin alpha 1a, [RH, Score=934, Expect=0.0]; ENSG00000123416, TUBA1B, tubulin alpha 1b, [RH, Score=931, Expect=0.0]; ENSG00000198033, TUBA3C, tubulin alpha 3c, [RH, Score=924, Expect=0.0]; ENSG00000075886, TUBA3D, tubulin alpha 3d, [RH, Score=924, Expect=0.0]; ENSG00000152086, TUBA3E, tubulin alpha 3e, [RH, Score=907, Expect=0.0]; ENSG00000167553, TUBA1C, tubulin alpha 1c, [RH, Score=888, Expect=0.0]} {Mouse: ENSMUSG00000072235, Tuba1a, tubulin, alpha 1A, [RH, Score=934, Expect=0.0]; ENSMUSG00000023004, Tuba1b, tubulin, alpha 1B, [RH, Score=931, Expect=0.0]; ENSMUSG00000067338, Tuba3b, tubulin, alpha 3B, [RH, Score=924, Expect=0.0]; ENSMUSG00000067702, Tuba3a, tubulin, alpha 3A, [RH, Score=924, Expect=0.0]; ENSMUSG00000043091, Tuba1c, tubulin, alpha 1C, [RH, Score=917, Expect=0.0]} {Dmel: FBgn0003884, alphaTub84B, alpha-Tubulin at 84B, [RH, Score=919, Expect=0.0]} {Celegans: WBGene00003175, mec-12, Tubulin alpha-3 chain Detyrosinated tubulin alpha-3 chain, [RH, Score=853, Expect=0.0]} {Smed: dd_Smed_v6_10947_0_2, dd_Smed_v6_10947_0_2, [RH, Score=930, Expect=0.0]} {RNA1509_11189, RNA1509_17022, RNA1509_22381, RNA1509_37519, RNA1509_43131, RNA1509_659, RNA1509_7393, RNA1509_785, RNA1509_835, RNA1509_9} {SMEDTYPE: Testis [Contig7537_SE3]}
2. MligTC454_55401 Mlig011207.g6 11.01 0.285 0.019

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Irradiation

HSPB1 hsp-25 Mlig011207.g6 {REF} {Length: 1304} {Pfam: Hsp20/alpha crystallin family [PF00011.21, score=96.9]; HSP20-like domain found in ArsA [PF17886.1, score=35.8]} {Human: ENSG00000106211, HSPB1, heat shock protein family B (small) member 1, [RH, Score=55.8, Expect=7e-09]} {Mouse: ENSMUSG00000004951, Hspb1, heat shock protein 1, [RH, Score=52.0, Expect=1e-07]} {Dmel: FBgn0031037, CG14207, [RH, Score=64.7, Expect=2e-12]} {Celegans: WBGene00002023, hsp-25, Heat Shock Protein, [RH, Score=72.0, Expect=6e-15]} {Smed: dd_Smed_v6_1039_0_1, dd_Smed_v6_1039_0_1, [RH, Score=96.7, Expect=1e-23]} {RNA1509_143, RNA1509_1512, RNA1509_20353, RNA1509_28963, RNA1509_3586, RNA1509_4347} {SMEDTYPE: X1 [raj_facs_types]}
3. MligTC454_36232 Mlig029904.g1 10.29 0.250 0.070

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Irradiation

Mlig029904.g1 {REF} {Length: 1353} {Pfam: Kazal-type serine protease inhibitor domain [PF07648.15, score=22.6]; Kazal-type serine protease inhibitor domain [PF00050.21, score=20.2]} {RNA1509_1153, RNA1509_119, RNA1509_132, RNA1509_2899, RNA1509_4374, RNA1509_493, RNA1509_5617, RNA1509_6040, RNA1509_8295}
4. MligTC454_33945 Mlig031719.g1 10.22 0.191 0.005

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Int S/G2/M

GenAge

RPL3 rpl-3 Mlig031719.g1 {REF} {Length: 1407} {TRANSSPLICED} {Pfam: Ribosomal protein L3 [PF00297.22, score=601.0]} {Human: ENSG00000100316, RPL3, ribosomal protein L3, [RH, Score=649, Expect=0.0]} {Mouse: ENSMUSG00000060036, Rpl3, ribosomal protein L3, [RH, Score=648, Expect=0.0]} {Dmel: FBgn0020910, RpL3, Ribosomal protein L3, [RH, Score=638, Expect=0.0]} {Celegans: WBGene00004414, rpl-3, 60S ribosomal protein L3, [RH, Score=608, Expect=0.0]} {Smed: dd_Smed_v6_127_0_1, dd_Smed_v6_127_0_1, [RH, Score=596, Expect=0.0]} {RNA1509_1388, RNA1509_16343, RNA1509_2153, RNA1509_25626, RNA1509_4325, RNA1509_4415, RNA1509_4728, RNA1509_4856, RNA1509_78, RNA1509_8560} {SMEDTYPE: X1 [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.252008.0]}
5. MligTC454_43702 Mlig033458.g3 9.91 1.274 0.000

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GM2A Mlig033458.g3 {REF} {Length: 1668} {Pfam: ML domain [PF02221.15, score=46.1]} {Human: ENSG00000196743, GM2A, GM2 ganglioside activator, [Score=62.0, Expect=3e-11]} {Mouse: ENSMUSG00000000594, Gm2a, GM2 ganglioside activator protein, [Score=64.3, Expect=3e-12]} {Smed: dd_Smed_v6_214_1_1, dd_Smed_v6_214_1_1, [RH, Score=89.4, Expect=4e-22]} {RNA1509_8277} {SMEDTYPE: Xins [raj_facs_types]}
6. MligTC454_44892 Mlig021796.g4 9.39 0.619 0.000

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TUBB4B tbb-4 Mlig021796.g4 {REF} {Length: 2284} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.25, score=231.3]; Tubulin C-terminal domain [PF03953.17, score=146.5]; Misato Segment II tubulin-like domain [PF10644.9, score=25.1]} {Human: ENSG00000188229, TUBB4B, tubulin beta 4B class IVb, [RH, Score=920, Expect=0.0]; ENSG00000137285, TUBB2B, tubulin beta 2B class IIb, [RH, Score=909, Expect=0.0]; ENSG00000104833, TUBB4A, tubulin beta 4A class IVa, [RH, Score=906, Expect=0.0]; ENSG00000232575, TUBB, tubulin beta class I, [RH, Score=905, Expect=0.0]; ENSG00000235067, TUBB, tubulin beta class I, [RH, Score=905, Expect=0.0]; ENSG00000183311, TUBB, tubulin beta class I, [RH, Score=905, Expect=0.0]; ENSG00000227739, TUBB, tubulin beta class I, [RH, Score=905, Expect=0.0]; ENSG00000196230, TUBB, tubulin beta class I, [RH, Score=905, Expect=0.0]; ENSG00000229684, TUBB, tubulin beta class I, [RH, Score=905, Expect=0.0]; ENSG00000232421, TUBB, tubulin beta class I, [RH, Score=905, Expect=0.0]; ENSG00000224156, TUBB, tubulin beta class I, [RH, Score=905, Expect=0.0]; ENSG00000137267, TUBB2A, tubulin beta 2A class IIa, [RH, Score=904, Expect=0.0]} {Mouse: ENSMUSG00000036752, Tubb4b, tubulin, beta 4B class IVB, [RH, Score=920, Expect=0.0]; ENSMUSG00000045136, Tubb2b, tubulin, beta 2B class IIB, [RH, Score=909, Expect=0.0]; ENSMUSG00000062591, Tubb4a, tubulin, beta 4A class IVA, [RH, Score=906, Expect=0.0]; ENSMUSG00000001525, Tubb5, tubulin, beta 5 class I, [RH, Score=905, Expect=0.0]; ENSMUSG00000058672, Tubb2a, tubulin, beta 2A class IIA, [RH, Score=904, Expect=0.0]} {Dmel: FBgn0284243, betaTub56D, beta-Tubulin at 56D, [RH, Score=862, Expect=0.0]} {Celegans: WBGene00006538, tbb-4, Tubulin beta-4 chain, [RH, Score=859, Expect=0.0]} {Smed: dd_Smed_v6_83_0_3, dd_Smed_v6_83_0_3, [RH, Score=919, Expect=0.0]} {RNA1509_21, RNA1509_4819, RNA1509_4990} {SMEDTYPE: X1 [raj_facs_types]}
7. MligTC454_36430 Mlig026050.g2 9.08 0.277 0.054

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Irradiation

Mlig026050.g2 {REF} {Length: 1320} {RNA1509_2349, RNA1509_2757, RNA1509_3926, RNA1509_5702}
8. MligTC454_66917 Mlig001709.g5 9.02 1.228 0.000

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GM2A Mlig001709.g5 {REF} {Length: 1121} {Pfam: ML domain [PF02221.15, score=40.0]} {Human: ENSG00000196743, GM2A, GM2 ganglioside activator, [Score=51.6, Expect=8e-08]} {Mouse: ENSMUSG00000000594, Gm2a, GM2 ganglioside activator protein, [Score=50.8, Expect=1e-07]} {Smed: dd_Smed_v6_214_1_1, dd_Smed_v6_214_1_1, [Score=56.2, Expect=4e-10]} {RNA1509_4662, RNA1509_960} {SMEDTYPE: Xins [raj_facs_types]}
9. MligTC454_29370 Mlig034889.g7 9.02 0.236 0.000

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Int S/G2/M

GenAge

RPL10A rpl-1 Mlig034889.g7 {REF} {Length: 1017} {TRANSSPLICED} {Pfam: Ribosomal protein L1p/L10e family [PF00687.21, score=193.4]; MaoC like domain [PF01575.19, score=23.2]; Family of unknown function (DUF5403) [PF17395.2, score=22.4]} {Human: ENSG00000198755, RPL10A, ribosomal protein L10a, [Score=212, Expect=3e-68]} {Mouse: ENSMUSG00000037805, Rpl10a, ribosomal protein L10A, [Score=214, Expect=3e-69]} {Dmel: FBgn0036213, RpL10Ab, Ribosomal protein L10Ab, [RH, Score=211, Expect=3e-68]} {Celegans: WBGene00004412, rpl-1, 60S ribosomal protein L10a, [RH, Score=213, Expect=5e-69]} {Smed: dd_Smed_v6_350_0_1, dd_Smed_v6_350_0_1, [Score=223, Expect=2e-73]} {RNA1509_1297} {SMEDTYPE: X1 [raj_facs_types]}
10. MligTC454_36837 Mlig028529.g2 8.94 0.314 0.014

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Irradiation

Mlig028529.g2 {REF} {Length: 938} {Pfam: EF-hand domain [PF13405.6, score=28.2]; EF hand [PF00036.32, score=26.3]; EF hand [PF13202.6, score=24.3]; EF-hand domain pair [PF13499.6, score=23.3]} {RNA1509_298}
11. MligTC454_45902 Mlig032878.g5 8.87 0.839 0.000

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TPPP tppp-1 Mlig032878.g5 {REF} {Length: 1937} {Pfam: p25-alpha [PF05517.12, score=123.9]} {Human: ENSG00000171368, TPPP, tubulin polymerization promoting protein, [Score=84.0, Expect=9e-20]} {Mouse: ENSMUSG00000021573, Tppp, tubulin polymerization promoting protein, [Score=82.8, Expect=1e-19]; ENSMUSG00000008813, Tppp2, tubulin polymerization-promoting protein family member 2, [Score=79.3, Expect=1e-18]} {Dmel: FBgn0266417, ringer, ringmaker, [Score=62.4, Expect=3e-12]} {Celegans: WBGene00016321, tppp-1, Tubulin polymerization-promoting protein homolog, [Score=69.7, Expect=4e-15]} {Smed: dd_Smed_v6_650_0_1, dd_Smed_v6_650_0_1, [RH, Score=175, Expect=1e-56]} {RNA1509_14128, RNA1509_16985, RNA1509_18104, RNA1509_2333, RNA1509_310, RNA1509_31624, RNA1509_4075, RNA1509_5154, RNA1509_5732} {SMEDTYPE: Neural (both ciliated and non-ciliated) [dd_Smed_v6_650_0_1, tubulin polymerization-promoting protein family member 3 (TPPP3)]} {SMEDTYPE: Xins [raj_facs_types]}
12. MligTC454_56547 Mlig034228.g7 8.69 0.189 0.021

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Int S/G2/M

RPL27 rpl-27 Mlig034228.g7 {REF} {Length: 573} {TRANSSPLICED} {Pfam: Ribosomal L27e protein family [PF01777.18, score=103.5]; KOW motif [PF00467.29, score=23.7]} {Human: ENSG00000131469, RPL27, ribosomal protein L27, [RH, Score=164, Expect=1e-52]} {Mouse: ENSMUSG00000063316, Rpl27, ribosomal protein L27, [RH, Score=164, Expect=9e-53]} {Dmel: FBgn0039359, RpL27, Ribosomal protein L27, [RH, Score=114, Expect=3e-33]} {Celegans: WBGene00004441, rpl-27, 60S ribosomal protein L27, [RH, Score=162, Expect=3e-52]} {Smed: dd_Smed_v6_200_0_1, dd_Smed_v6_200_0_1, [RH, Score=143, Expect=7e-45]} {RNA1509_3058, RNA1509_350, RNA1509_591, RNA1509_701}
13. MligTC454_55402 Mlig011207.g1 8.61 0.817 0.000

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Irradiation

HSPB1 hsp-25 Mlig011207.g1 {REF} {Length: 2527} {Pfam: Hsp20/alpha crystallin family [PF00011.21, score=96.9]; HSP20-like domain found in ArsA [PF17886.1, score=35.8]} {Human: ENSG00000106211, HSPB1, heat shock protein family B (small) member 1, [RH, Score=55.8, Expect=7e-09]} {Mouse: ENSMUSG00000004951, Hspb1, heat shock protein 1, [RH, Score=52.0, Expect=1e-07]} {Dmel: FBgn0031037, CG14207, [RH, Score=64.7, Expect=2e-12]} {Celegans: WBGene00002023, hsp-25, Heat Shock Protein, [RH, Score=72.0, Expect=6e-15]} {Smed: dd_Smed_v6_1039_0_1, dd_Smed_v6_1039_0_1, [RH, Score=96.7, Expect=1e-23]} {RNA1509_1512} {SMEDTYPE: X1 [raj_facs_types]}
14. MligTC454_36828 Mlig090554.g2, Mlig055185.g4 8.56 0.247 0.021

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Mlig090554.g2 {REF} {Length: 257} {TRANSSPLICED} {RNA1509_35164}

Mlig055185.g4 {REF} {Length: 543} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_35164}
15. MligTC454_45478 Mlig027710.g2 8.54 1.329 0.000

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Mlig027710.g2 {REF} {Length: 1216} {RNA1509_10853, RNA1509_19072, RNA1509_2180, RNA1509_22083, RNA1509_31840, RNA1509_32298, RNA1509_6631}
16. MligTC454_42809 Mlig024268.g1 8.53 0.461 0.000

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KDM8 Mlig024268.g1 {REF} {Length: 4716} {TRANSSPLICED} {Pfam: Cupin-like domain [PF13621.6, score=22.8]} {Human: ENSG00000155666, KDM8, lysine demethylase 8, [Score=113, Expect=4e-27]} {Mouse: ENSMUSG00000030752, Kdm8, lysine (K)-specific demethylase 8, [Score=106, Expect=5e-25]} {Dmel: FBgn0035166, CG13902, [Score=87.8, Expect=7e-19]} {Smed: dd_Smed_v6_5363_0_1, dd_Smed_v6_5363_0_1, [Score=94.7, Expect=2e-21]} {RNA1509_256, RNA1509_33307}
17. MligTC454_52983 Mlig056680.g52 8.53 0.851 0.000

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GenomeMaintenance

PROC try-3 Mlig056680.g52 {REF} {Length: 1434} {Pfam: Trypsin [PF00089.26, score=98.2]; Trypsin-like peptidase domain [PF13365.6, score=37.5]} {Human: ENSG00000115718, PROC, protein C, inactivator of coagulation factors Va and VIIIa, [Score=67.0, Expect=3e-12]} {Mouse: ENSMUSG00000024386, Proc, protein C, [Score=75.9, Expect=2e-15]; ENSMUSG00000034039, Prss29, protease, serine 29, [Score=73.6, Expect=4e-15]} {Dmel: FBgn0036738, CG7542, [Score=77.0, Expect=1e-16]} {Celegans: WBGene00006621, try-3, TRYpsin-like protease, [Score=48.1, Expect=1e-06]} {Smed: dd_Smed_v6_10973_0_2, dd_Smed_v6_10973_0_2, [RH, Score=111, Expect=4e-30]} {RNA1509_29} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Sexual_biased [CUFF.218707.0]}
18. MligTC454_12475 Mlig040043.g3 8.5 -0.126 0.343

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Mlig040043.g3 {REF} {Length: 1742} {Pfam: Glycosyl hydrolases family 16 [PF00722.21, score=59.0]; Carbohydrate binding domain (family 32) [PF15886.5, score=40.4]} {Dmel: FBgn0040323, GNBP1, Gram-negative bacteria binding protein 1, [RH, Score=163, Expect=3e-44]} {RNA1509_1713}
19. MligTC454_35213 Mlig020636.g3 8.45 0.106 0.137

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CTSL cpl-1 Mlig020636.g3 {REF} {Length: 2041} {TRANSSPLICED} {Pfam: Papain family cysteine protease [PF00112.23, score=298.4]; Cathepsin propeptide inhibitor domain (I29) [PF08246.12, score=47.7]} {Human: ENSG00000135047, CTSL, cathepsin L, [RH, Score=343, Expect=4e-116]} {Mouse: ENSMUSG00000021477, Ctsl, cathepsin L, [RH, Score=339, Expect=8e-115]} {Dmel: FBgn0013770, Cp1, Cysteine proteinase-1, [RH, Score=394, Expect=2e-136]} {Celegans: WBGene00000776, cpl-1, CathePsin L family, [RH, Score=351, Expect=9e-120]} {Smed: dd_Smed_v6_48_0_1, dd_Smed_v6_48_0_1, [Score=384, Expect=1e-132]} {RNA1509_17920, RNA1509_18227, RNA1509_42547, RNA1509_4526, RNA1509_48926, RNA1509_6166, RNA1509_799} {SMEDTYPE: Xins [raj_facs_types]} {SMEDTYPE: Asexual_biased [CUFF.359663.0]} {SMEDTYPE: repression [none]}
20. MligTC454_37336 Mlig031765.g4 8.44 0.135 0.089

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Int S/G2/M

GenAge

RPL30 rpl-30 Mlig031765.g4 {REF} {Length: 569} {TRANSSPLICED} {Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family [PF01248.26, score=81.3]} {Human: ENSG00000156482, RPL30, ribosomal protein L30, [RH, Score=169, Expect=2e-55]} {Mouse: ENSMUSG00000058600, Rpl30, ribosomal protein L30, [RH, Score=168, Expect=2e-55]} {Dmel: FBgn0086710, RpL30, Ribosomal protein L30, [RH, Score=162, Expect=2e-53]} {Celegans: WBGene00004444, rpl-30, Ribosomal Protein, Large subunit, [Score=153, Expect=1e-49]} {Smed: dd_Smed_v6_111_0_1, dd_Smed_v6_111_0_1, [RH, Score=126, Expect=6e-39]} {RNA1509_3774, RNA1509_5084, RNA1509_578, RNA1509_7389} {SMEDTYPE: X1 [raj_facs_types]}
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